2021

Oxtoby, N., Leyland, L., Aksman, L., Thomas, G., Bunting, E., Wijeratne, P., ...Bremner, F. (2021). Sequence of clinical and neurodegeneration events in Parkinson’s disease progression. Brain: a journal of neurology,

2020

Xu, M.-.C., Oxtoby, N., Alexander, D.C., Jacob, J. (2020). Learning To Pay Attention To Mistakes.
Pascuzzo, R., Oxtoby, N.P., Young, A.L., Blevins, J., Castelli, G., Garbarino, S., ...Appleby, B.S. (2020). Prion propagation estimated from brain diffusion MRI is subtype dependent in sporadic Creutzfeldt–Jakob disease. Acta Neuropathologica, doi:10.1007/s00401-020-02168-0
O'Connor, A., Weston, P.S.J., Pavisic, I.M., Ryan, N.S., Collins, J.D., Lu, K., ...Oxtoby, N.P. (2020). Quantitative detection and staging of presymptomatic cognitive decline in familial Alzheimer's disease: a retrospective cohort analysis. ALZHEIMERS RESEARCH & THERAPY, 12 (1), doi:10.1186/s13195-020-00695-2
Firth, N.C., Primativo, S., Brotherhood, E., Young, A.L., Yong, K.X.X., Crutch, S.J., ...Oxtoby, N.P. (2020). Sequences of cognitive decline in typical Alzheimer's disease and posterior cortical atrophy estimated using a novel event-based model of disease progression.. Alzheimers Dement, doi:10.1002/alz.12083
Aarestrup, F.M., Albeyatti, A., Armitage, W.J., Auffray, C., Augello, L., Balling, R., ...Black, M. (2020). Towards a European health research and innovation cloud (HRIC). Genome medicine, 12 (1), 18. doi:10.1186/s13073-020-0713-z

2019

Mihalik, A., Brudfors, M., Robu, M., Ferreira, F.S., Lin, H., Rau, A., ...Tariq, M. (2019). ABCD Neurocognitive Prediction Challenge 2019: Predicting individual fluid intelligence scores from structural MRI using probabilistic segmentation and kernel ridge regression.
Oxtoby, N.P., Ferreira, F.S., Mihalik, A., Wu, T., Brudfors, M., Lin, H., ...Zor, C. (2019). ABCD Neurocognitive Prediction Challenge 2019: Predicting Individual Residual Fluid Intelligence Scores from Cortical Grey Matter Morphology.
Ravi, D., Alexander, D.C., Oxtoby, N.P. (2019). Degenerative Adversarial NeuroImage Nets: Generating Images that Mimic Disease Progression. In Shen, D., Liu, T., Peters, T.M., Staib, L.H., Essert, C., Zhou, S., ...Khan, A. (Eds.), (pp. 164-172). SPRINGER INTERNATIONAL PUBLISHING AG.
Ravì, D., Alexander, D.C., Oxtoby, N.P. (2019). Degenerative Adversarial NeuroImage Nets: Generating Images that Mimic Disease Progression..
Garbarino, S., Lorenzi, M., Oxtoby, N.P., Vinke, E.J., Marinescu, R.V., Eshaghi, A., ...Barkhof, F. (2019). Differences in topological progression profile among neurodegenerative diseases from imaging data.. Elife, 8 doi:10.7554/eLife.49298
Marinescu, R.V., Lorenzi, M., Blumberg, S.B., Young, A.L., Planell-Morell, P., Oxtoby, N.P., ...Golland, P. (2019). Disease Knowledge Transfer Across Neurodegenerative Diseases.
Marinescu, R.V., Eshaghi, A., Lorenzi, M., Young, A.L., Oxtoby, N.P., Garbarino, S., ...Alexander, D.C. (2019). DIVE: A spatiotemporal progression model of brain pathology in neurodegenerative disorders.. CoRR, abs/1901.03553
Marinescu, R.V., Eshaghi, A., Lorenzi, M., Young, A.L., Oxtoby, N.P., Garbarino, S., ...Alzheimer's Disease Neuroimaging, I.n.i.t.i.a.t.i.v.e. (2019). DIVE: A spatiotemporal progression model of brain pathology in neurodegenerative disorders.. Neuroimage, doi:10.1016/j.neuroimage.2019.02.053
Firth, N.C., Primativo, S., Marinescu, R.-.V., Shakespeare, T.J., Suarez-Gonzalez, A., Lehmann, M., ...Paterson, R.W. (2019). Longitudinal neuroanatomical and cognitive progression of posterior cortical atrophy.. Brain, doi:10.1093/brain/awz136
Archetti, D., Ingala, S., Venkatraghavan, V., Wottschel, V., Young, A.L., Bellio, M., ...Alexander, D.C. (2019). Multi-study validation of data-driven disease progression models to characterize evolution of biomarkers in Alzheimer's disease.. Neuroimage Clin, 24 101954. doi:10.1016/j.nicl.2019.101954
Marinescu, R.V., Oxtoby, N.P., Young, A.L., Bron, E.E., Toga, A.W., Weiner, M.W., ...Klein, S. (2019). TADPOLE challenge: Accurate alzheimer’s disease prediction through crowdsourced forecasting of future data.

2018

Wijeratne, P.A., Young, A.L., Oxtoby, N.P., Marinescu, R.V., Firth, N.C., Johnson, E.B., ...Tabrizi, S.J. (2018). An image-based model of brain volume biomarker changes in Huntington's disease. Annals of Clinical and Translational Neurology, doi:10.1002/acn3.558
Oxtoby, N., Young, A., Cash, D., Benzinger, T., Fagan, A., Morris, J., ...Alexander, D. (2018). Data-driven models of dominantly-inherited Alzheimer’s disease progression. .
Oxtoby, N.P., Young, A.L., Cash, D.M., Benzinger, T.L.S., Fagan, A.M., Morris, J.C., ...Alexander, D.C. (2018). Data-driven models of dominantly-inherited Alzheimer's disease progression.. BRAIN, 141 1529-1544. doi:10.1093/brain/awy050
Firth, N., Oxtoby, N., Primativo, S., Brotherhood, E., Young, A., Yong, K.X.X., ...Alexander, D. (2018). Non-Parametric Mixture Modelling and its Application to Disease Progression Modelling. .
Marinescu, R.V., Oxtoby, N.P., Young, A.L., Bron, E.E., Toga, A.W., Weiner, M.W., ...Alexander, D.C. (2018). TADPOLE Challenge: Prediction of Longitudinal Evolution in Alzheimer's Disease. arXiv,
Young, A.L., Marinescu, R.V., Oxtoby, N.P., Bocchetta, M., Yong, K., Firth, N.C., ...Cardoso, J. (2018). Uncovering the heterogeneity and temporal complexity of neurodegenerative diseases with Subtype and Stage Inference. Nat Commun, 9 (1), 4273. doi:10.1038/s41467-018-05892-0

2017

Marinescu, R.V., Eshaghi, A., Lorenzi, M., Young, A.L., Oxtoby, N.P., Garbarino, S., ...Alexander, D.C. (2017). A vertex clustering model for disease progression: Application to cortical thickness images.
Oxtoby, N.P., Garbarino, S., Firth, N.C., Warren, J.D., Schott, J.M., Alexander, D.C. (2017). Data-Driven Sequence of Changes to Anatomical Brain Connectivity in Sporadic Alzheimer's Disease. FRONTIERS IN NEUROLOGY, 8 doi:10.3389/fneur.2017.00580
Oxtoby, N.P., Alexander, D.C. (2017). Imaging plus X: multimodal models of neurodegenerative disease.. Current opinion in neurology, doi:10.1097/wco.0000000000000460

2015

Young, A.L., Oxtoby, N.P., Ourselin, S., Schott, J.M., Alexander, D.C. (2015). A simulation system for biomarker evolution in neurodegenerative disease. MEDICAL IMAGE ANALYSIS, 26 (1), 47-56. doi:10.1016/j.media.2015.07.004
Young, A.L., Oxtoby, N.P., Huang, J., Marinescu, R.V., Daga, P., Cash, D.M., ...Alexander, D.C. (2015). Multiple orderings of events in disease progression. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 9123 711-722. doi:10.1007/978-3-319-19992-4_56

2014

Young, A.L., Oxtoby, N.P., Daga, P., Cash, D.M., Fox, N.C., Ourselin, S., ...Alexander, D.C. (2014). A data-driven model of biomarker changes in sporadic Alzheimer's disease. BRAIN, 137 2564-2577. doi:10.1093/brain/awu176
Oxtoby, N.P., Young, A.L., Daga, P., Cash, D.M., Ourselin, S., Schott, J.M., ...Alexander, D.C. (2014). Learning imaging biomarker trajectories from noisy Alzheimer's disease data using a Bayesian multilevel model.

2013

Rowe, M.C., Zhang, H., Oxtoby, N., Alexander, D.C. (2013). Beyond Crossing Fibers: Tractography Exploiting Sub-voxel Fibre Dispersion and Neighbourhood Structure. In Information Processing in Medical Imaging - IPMI 2013. (pp. 402-413). Springer.
Oxtoby, N.P., Griffith, E.J., Durniak, C., Ralph, J.F., Samsonov, D. (2013). Ideal Gas Behavior of a Strongly Coupled Complex (Dusty) Plasma. PHYSICAL REVIEW LETTERS, 111 (1), doi:10.1103/PhysRevLett.111.015002

2012

Oxtoby, N.P., Ralph, J.F., Durniak, C., Samsonov, D. (2012). Tracking shocked dust: State estimation for a complex plasma during a shock wave. Physics of Plasmas, 19 013708. doi:10.1063/1.3678201

2011

Oxtoby, N.P., Ralph, J.F., Durniak, C., Samsonov, D. (2011). Interacting Multiple Model estimators for tracking thousands of interacting, small targets in a complex plasma.
Oxtoby, N., Ralph, J.F., Durniak, C., Samsonov, D. (2011). Myriad target tracking in a dusty plasma..
Ralph, J.F., Oxtoby, N.P. (2011). Quantum Filtering One Bit at a Time. Phys. Rev. Lett., 107 260503. doi:10.1103/PhysRevLett.107.260503
Davies, J.M., Ralph, J.F., Oxtoby, N.P. (2011). Tracking System to Maximize the Engagement Envelope of a Data Linked Weapon.
Oxtoby, N.P., Ralph, J.F., Durniak, C., Samsonov, D. (2011). Visualizing a Dusty Plasma Shock Wave via Interacting Multiple-Model Mode Probabilities. Plasma Science, IEEE Transactions on, 39 2772-2773. doi:10.1109/TPS.2011.2155101

2010

Durniak, C., Samsonov, D., Oxtoby, N.P., Ralph, J.F. (2010). Molecular Dynamics Simulations of Dynamic Phenomena in Complex Plasmas. (to appear) IEEE TRANSACTIONS ON PLASMA SCIENCE, 6
Oxtoby, N.P., Ralph, J.F., Samsonov, D., Durniak, C. (2010). Tracking interacting dust: comparison of tracking and state estimation techniques for dusty plasmas.

2009

Oxtoby, N.P., Rivas, Á., Huelga, S.F., Fazio, R. (2009). Probing a composite spin-boson environment. New Journal of Physics, 11 063028.
Rivas, Á., Oxtoby, N., Huelga, S. (2009). Stochastic Resonance phenomena in spin chains. The European Physical Journal B - Condensed Matter and Complex Systems, 69 51-57. doi:10.1140/epjb/e2009-00108-5

2008

Oxtoby, N.P., Gambetta, J., Wiseman, H.M. (2008). Model for monitoring of a charge qubit using a radio-frequency quantum point contact including experimental imperfections. Phys. Rev. B, 77 125304.

2006

Oxtoby, N.P., Wiseman, H.M., Sun, H.-.B. (2006). Sensitivity and back action in charge qubit measurements by a strongly coupled single-electron transistor. Phys. Rev. B, 74 045328. doi:10.1103/PhysRevB.74.045328

2005

Oxtoby, N.P., Warszawski, P., Wiseman, H.M., Sun, H.-.B., Polkinghorne, R.E.S. (2005). Quantum trajectories for the realistic measurment of a solid-state charge qubit. Phys. Rev. B, 71 165317.

2003

Oxtoby, N., Sun, H.B., Wiseman, H.M. (2003). Noise in detection of qubit states using a quantum point contact.
Oxtoby, N.P., Sun, H.-.B., Wiseman, H.M. (2003). Non-ideal monitoring of a qubit state using a quantum tunnelling device. J. Phys.: Condens. Matter, 15 8055-8064.

1900

Oxtoby, N.P. (1900). "Keeping it real": A quantum trajectory approach to realistic measurement of solid-state quantum systems. (Doctoral Dissertation). Griffith University.
Ravi, D., Blumberg, S.B., Mengoudi, K., Xu, M., Alexander, D.C., Oxtoby, N.P. (1900). Degenerative Adversarial NeuroImage Nets for 4D Simulations: Application in Longitudinal MRI.
Young, A.L., Oxtoby, N.P., Huang, J., Marinescu, R.V., Daga, P., Cash, D.M., ...Alexander, D.C. (1900). Multiple Orderings of Events in Disease Progression.
Marinescu, R.V., Oxtoby, N.P., Young, A.L., Bron, E.E., Toga, A.W., Weiner, M.W., ...Toni, T. (1900). The Alzheimer's Disease Prediction Of Longitudinal Evolution (TADPOLE) Challenge: Results after 1 Year Follow-up.